SE3820193

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8511
  • Solanum tuberosum
  • SE3820193
  • Mutator
  • M11
  • PGSC0003DMB000000458:216387-216736
  • TTAATTTTA
  • AGGGAAAATGCATAAGTATCCCCCCAGCCTATGCCCGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATTTT                                       -----   -   GAGATACACCTAACCTTTACTAAGGTCCTATTACCCCCCCGAACTTATTTTATATGTAATATTCTACCCCTTTTTGGCCTACGTGGCTCTATCTTGTGGGCCCAGCGCACGTTAACATT
        AGGGAAAATGCATAAGTATCCCCCCAGCCTATGCCCGAA     ATC TCA                                                                                                                       
        |||||||||||||||||||||||||||||||||||||||     ||| |||                                                                                                                        
        TCCCTTTTACGTATTCATGGGGGGGTCGGATACGGGCTT     GGG TCG                                                                                                                       
ATTTTAAT                                       NNNNG   G   GATACGGGCTTTAGAGTCTCTGTGTGGATTGGAAATGATTCCAGGATAATGGGGGAGCTTGAATTAAATAGATATTATAAGATGGGGAAAAGCCGGATGCACCGTGATAGGAACTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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