SE3830195

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8513
  • Solanum tuberosum
  • SE3830195
  • hAT
  • Hat17
  • PGSC0003DMB000000632:76685-76932
  • TGTGCAGG
  • GTGCAGGCAGTGGCGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
T     G             ----CA   --      GTCCGTGGGTGCCAAATGGGATTCGAACCCGCAACCTCAACCTTCTAAAGTTTCCCTCTTACCGTGGCACCACAAGCCAATTTTGTTCTG
 GTGCA GCAGTGGCGGATC      GGA  TTTAGA                                                                                          
 ||||| |||||||||||||      |||  ||||||                                                                                           
 TATGT TGTCACCGCCTAG      CCC  CACCGC                                                                                          
G     G             ATACTT   GA      CACGGTGCGGTGGGGGCTTGAAGCTGCCTTCGAGATATATATGTATCCATATATATATATTATAATATATTTATATTTCGCACGGTGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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