Plant MITE

SE3830196

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8514
Solanum tuberosum
SE3830196
hAT
Hat19
PGSC0003DMB000000278:48854-48990
GTCAGTTA
CTATGTTGCTCGGACTCTTCAAAAATGTCGACGGGTGCGTGTCGGATCCTCCAAAAATAGTGTATTTTTGAAGGATCCAACACGGGTACGGCAACATTTTTGGAGAGTCCAAGCAACTTAG

Secondary structure and sequence

TSD TIR

5'

3'

GTCAGTTA   T      C                 C A  GG G     C       C        G
        CTA GTTGCT GGACTCTTCAAAAATGT G CG  T CGTGT GGATCCT CAAAAATA 
        ||| |||||| ||||||||||||||||| | ||  | ||||| ||||||| |||||||| T
        GAT CAACGA CCTGAGAGGTTTTTACA C GC  G GCACA CCTAGGA GTTTTTAT 
ATTGACTG   T      A                 A G  AT G     A       A        G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE3830196

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE3830196