Plant MITE

SE3810201

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8519
Solanum tuberosum
SE3810201
Tc1/Mariner
St10
chr03:2432163-2432503
N.A.
TACTCCCTCCGTCCCATTTTATATGTCACTTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

     C   C                   -       ------ACTTTGCAC       -- AGAAATGATGTAACTTTACCCTTCTACCCTTATTTAATTTTTTTGGAACTCAAGTTTTCAATCAATGAATATGAATTAATTTATTTTGATTAATTAATTTAACCAATGAACAT
 TACT CCT CGTCCCATTTTATATGTCA CTTTTTT               TTGCATT  A                                                                                                                 
 |||| ||| ||||||||||||||||||| |||||||               |||||||  |                                                                                                                 G
 ATGA GGA GCAGGGTAAAATATACAGT GGGAAAG               GTATTAT  A                                                                                                                 
T    A   A                   A       ATATTTATCAACCAG       GA CAGTAAAGTATTTTAGTTACGTATTTAATAGTACAACAAGGAAAAAATGGGAACACTCAATAATCGAAACTTTTATATGTAAACTGGTTAAATCTTTTCGATTCATTTACTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810201

TACTCCCTCCGTCCCATTTTATATGTCACTTTTTTACTTTGCACTTGCATTAAGAAATGATGTAACTTTACCCTTCTACCCTTATTTAATTTTTTTGGAACTCAAGTTTTCAATCAATGAATATGAATTAATTTATTTTGATTAATTAATTTAACCAATGAACATGAATCATTTACTTAGCTTTTCTAAATTGGTCAAATGTATATTTTCAAAGCTAATAACTCACAAGGGTAAAAAAGGAACAACATGATAATTTATGCATTGATTTTATGAAATGACAAGTATTATGGACCAACTATTTATAGAAAGGGATGACATATAAAATGGGACGAAGGAAGTAT

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