SE3810202

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8520
  • Solanum tuberosum
  • SE3810202
  • Tc1/Mariner
  • St5
  • chr08:18855023-18855274
  • TA
  • TACTCCCTCCATTTCAATTTATTTGTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A         AT       ---ACT   C     ----------- GTCCGTTTAAAAAAGAATGTCTCTTTCCTTTTTTGGCAACTCTTTAATTTCAACTTTTCACATAGCGTATTTAAGAC
TACTCCCTCC TTTCAATTT  TTGTCCT      TTC TTTTA           A                                                                             
|||||||||| |||||||||  |||||||      ||| |||||           |                                                                             C
ATGAGGGAGG AAAGTTAAA  AGCAGGA      TGA ACCGT           T                                                                             
          C         CT       CAAAAC   -     ACTTCAAATTC TTCATTTCTTATGAAAACTTAGAACACCAGAATTTAATTTCTATACATCTTACATGGTTTAACAGGAAATAAGAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3