SE3830207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8525
  • Solanum tuberosum
  • SE3830207
  • hAT
  • Hat19
  • chr06:54879214-54879350
  • GTCTTGAA
  • TCTTGAACTATGTTGCTTGGACTCTTCAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
G  TT  A   T                      ATCGA  G  G     C       C        G
 TC  GA CTA GTTGCTTGGACTCTTCAAAAAT     CG GT TGTGT GGATCCT CAAAAATA 
 ||  || ||| ||||||||||||||||||||||     || || ||||| ||||||| |||||||| T
 AG  CT GAT CAACGAGCCTGAGAGGTTTTTA     GT TG GCACA CCTAGGA GTTTTTAT 
A  TT  G   T                      CAACG  G  G     A       A        G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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