SE3850208

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8526
  • Solanum tuberosum
  • SE3850208
  • PIF/harbinger
  • To5
  • chr04:45304022-45304467
  • TTA
  • AGGGGTCGTTTGGTAGAGTGTATTAGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT                       T    -------------------AAAA      A         CT   --      -------CT      TTGTTTGGTACTCTTTTCCAACCTATGGGCATTAGTTATACACTCTATAGTGTATTAAGGTGTGTATTGCTAATACCATGGATTTCTAGGTAGTAGCAATGCAATGATTATAATGCATGCATTAGCATGATTAAAGACCC
  AGGGGTCGTTTGGTAGAGTGTAT AGAA                       TAATGC TGCATTAGC  TGT  GTATTA         AGTACC                                                                                                                                            
  ||||||||||||||||||||||| ||||                       |||||| |||||||||  |||  ||||||         ||||||                                                                                                                                             
  TCCCCAGCAAACCATCTCACATA TCTT                       ATTACG ACGTAATCG  ACG  CATAAT         CGTAAT                                                                                                                                            
AT                       T    ATTACAGTTTATCCCACATAATC      A         TT   TA      CAATACGAA      TAATATGTATCCTAATGAAATACGTAGCAAACCAAACTACGTATTTTTTTTATCATACGTAACGTATTTTTTTAATTAAATGTTTCTATAGGAGGTGATAATACCACCTTTTCTACATTTTTTCCAAAACTCCTCGTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End