Plant MITE

SE3820212

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8530
Solanum tuberosum
SE3820212
Mutator
M43
chr01:19580277-19580987
TCAATATTG
AATATTGGCATAATACATAAAGAGGACCTTTAACTTGGCATCAATTCACAACTATGACCCTAAACTTTGCCAGTGCACAAGTAGGCACTTTAACTATCACAAA

Secondary structure and sequence

TSD TIR

5'

3'

TC      ---                                        C            C          C                           A    -TTTA            C  GTAT    --  -              T     AATGCT        GCTGCCAACTAATTAAAATAAATACACGTGGATTTTTCAATTAAAAAACTGAAAATAAAAACAAAATAAATATCAATTAACAACTCTGACCCTATGCTTATAACGGAGAACAACGTTTTCCTCTTTCTTCTCTACAAAATCCTAACCTAAGTTCCCACATTTCATCCTTCGAATCAAAGGTAAAATTG
  AATATT   GGCATAATACATAAAGAGGACCTTTAACTTGGCATCAATT ACAACTATGACC TAAACTTTGC AGTGCACAAGTAGGCACTTTAACTATC CAAA     AACAATTAAACA TC    ATCC  CA GGCAAAGTGCGTGA ATACA      TCTACGTG                                                                                                                                                                                            
  ||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||     |||||||||||| ||    ||||  || |||||||||||||| |||||      ||||||||                                                                                                                                                                                            T
  TTATAA   CCGTATTATGTATTTCTCCTGGAAATTGAACTGTAGTTAA TGTTGATACTGG ATTTGAAACG TCACGTGTTCATCTGTGAAGTTGATAG GTTT     TTGTTAATTTGT AG    TAGG  GT CCGTTTCACGCACT TGTGT      AGTTAATC                                                                                                                                                                                            
        CTT                                        A            A          A                           -    TTAAA            C  --AT    AT  A              T     ----GA        CGCGCAGTCACCATTTTTATTTCCGGGGTTGTCATTTTTTTTTTTTTCGAATTTACTGTGAAGATGGGAATTACTTAGAGAAAGTATATATATAGGAAAAAAATTTAGTTTTAGAGTGAAATGAGAGAAGAAAGATTAAAGAAGTTGTCGAAAAACGGTAAAAGGAGAGAAAGAAGTGTTAAAGAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820212

TCAATATTGGCATAATACATAAAGAGGACCTTTAACTTGGCATCAATTCACAACTATGACCCTAAACTTTGCCAGTGCACAAGTAGGCACTTTAACTATCACAAATTTAAACAATTAAACACTCGTATATCCCAGGCAAAGTGCGTGATATACAAATGCTTCTACGTGGCTGCCAACTAATTAAAATAAATACACGTGGATTTTTCAATTAAAAAACTGAAAATAAAAACAAAATAAATATCAATTAACAACTCTGACCCTATGCTTATAACGGAGAACAACGTTTTCCTCTTTCTTCTCTACAAAATCCTAACCTAAGTTCCCACATTTCATCCTTCGAATCAAAGGTAAAATTGTTCAAGAAATTGTGAAGAAAGAGAGGAAAATGGCAAAAAGCTGTTGAAGAAATTAGAAAGAAGAGAGTAAAGTGAGATTTTGATTTAAAAAAAGGATATATATATGAAAGAGATTCATTAAGGGTAGAAGTGTCATTTAAGCTTTTTTTTTTTTTACTGTTGGGGCCTTTATTTTTACCACTGACGCGCCTAATTGAAGTGTGTTTCACGCACTTTGCCATGTAGGATTAGACTGTTTAATTGTTAAATTTTTGGATAGTTGAAGTGTCTACTTGTGCACTAGCAAAGTTTAAGGTCATAGTTGTAAATTGATGTCAAGTTAAAGGTCCTCTTTATGTATTATGCCTTCAATATT

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