SE3820215

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8533
  • Solanum tuberosum
  • SE3820215
  • Mutator
  • M19
  • chr01:6952472-6952908
  • TTCATTCAA
  • AAGGGAAAAGGCTCAAATATGCCATCGAACTTTCAGAAAAGGCTTATTTATACCATTCGTTAAAAGTTTGGCTCATCTATGCCATTACCGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCATTC                         C                         AC                       C                 AGAAA                                          T        -    A                AA         GACGTGGCCG     --TAAT    T    GT
       AAGGGAAAAGGCTCAAATATGCCAT GAACTTTCAGAAAAGGCTTATTTAT  CATTCGTTAAAAGTTTGGCTCAT TATGCCATTACCGTTTA     AGGCTCATTCATGCCATTATTTTTTAACGGTGGTTTTGCAAA CCATTTTT ATAC TGGCCAATTATAATTC  CCATGTCAT          AATTA      TCAA ATTC  
       ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||          |||||      |||| ||||  T
       TTCCCTTTTCCGAGTTTATACGGTA CTTGAAAGTCTTTTCCGAGTAAATA  GTAGGCAATTTTCAAACCGAGTA ATACGGTAATGGTAAAT     TCCGAGTAAGTACGGTAATAAAAAATTGCCACTAAAACGTTT GGTAAAAA TGTG ACCGGTTAATATTAAG  GGTGCAGTA          TTAAT      AGTT TAAG  
AACTTAC                         A                         CA                       A                 -----                                          T        A    C                CC         ATTAAAAAAA     TTTTTT    T    AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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