SE3840216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8534
  • Solanum tuberosum
  • SE3840216
  • CACTA
  • Ca1
  • chr11:9831389-9831613
  • AGA
  • CACTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGA       ATAAA     CTT TAGCGGCAATAAATAGACACATTAATAAAGAGTGTTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGGCTTT
   CACTACA     AATAA   T                                                                                            
   |||||||     |||||   |                                                                                            A
   GTGATGT     ATTTT   T                                                                                            
AGA       -----     --- TACTAGAAATCGTTATTAATTAATTGCCGTTATCGAGTTAACGGTGATTTATACATAAAAATCGCCGTTAATTGTGAGAAACATATACAGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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