SE3830220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8538
  • Solanum tuberosum
  • SE3830220
  • hAT
  • Hat32
  • chr04:45853848-45854174
  • TTTGAGAC
  • TTTGAGACCAGGGGCGGCTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    G    C             ---CAA  ---  GAAAAAAAAGCGATTGCCTTAGGCCCCAAAATTTGAGGGGCCTCATTTTAAAAAAATAAATAGGTTATAAGTATTTTTTTATTTTTAAATATCGAGTATTACTTGTAGAAAATAAAAACATTTCATAAAAG
 TTT AGAC AGGGGCGGCTCTA      CT   TT                                                                                                                                   
 ||| |||| |||||||||||||      ||   ||                                                                                                                                   A
 AGA TTTG TCCCCGCCGAGAT      GC   CG                                                                                                                                   
C   G    -             TATTTA  CAC  GATTTCGGTTTAGGCTTACCTCCGGAATTTAAGCTTATATATAAAAAATACTTCAAATAATATCGATTAATAAAAATTAGAAAGAACTCTGTGTCATAAGTATTAAACAGCTTGAAGATAATGAAGAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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