Plant MITE

SE3810222

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8540
Solanum tuberosum
SE3810222
Tc1/Mariner
St5
chr10:42861415-42861668
TA
TACTCCCTCCGTTTCAAAAAAGAATGATCTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

        C     C             C      GAC    A    AGTTTAAGAAAAGAAAGAATATTTTTTAATCTTGTGATTCTAAATTAAAATTATGTCAAATGTACCAAAATGTCCTTTAATC
TACTCCCT CGTTT AAAAAAGAATGAT TAGTTT   TTGG ACGG                                                                                  
|||||||| ||||| ||||||||||||| ||||||   |||| ||||                                                                                  T
ATGAGGGA GCAAA TTTTTTCTTACTG GTTAAA   GGAA AAAT                                                                                  
        A     -             A      ---    -    CAGACAAATTTTTTCTTACTGGGGAAAGGAAAAAACCGTTGTGAAATTGAAATTGAAAGGTGAACTGTACAAATTCCGGTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810222

TACTCCCTCCGTTTCAAAAAAGAATGATCTAGTTTGACTTGGAACGGAGTTTAAGAAAAGAAAGAATATTTTTTAATCTTGTGATTCTAAATTAAAATTATGTCAAATGTACCAAAATGTCCTTTAATCTTGTGGCCTTAAACATGTCAAGTGGAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAGACTAAAAAGGAAATTGAGTCATTCTTTTTTAAACGAAGGGAGTA

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