SE3810223

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8541
  • Solanum tuberosum
  • SE3810223
  • Tc1/Mariner
  • St18
  • PGSC0003DMB000000968:23025-23287
  • TA
  • TACTCCCTCCATTTCATATTAATTGAATTTTTGAGGCATTTTTCATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                    CA    T       -----------------------------------C        TTAATTGTTCAGTTTTCAAAACTACTTTTAGAGTGTTCTTCCAATTTTATCCTTC
TACTCCCTCCATTTCATATTAATTGAATTTTTGAGG  TTTT CATTTTT                                    AAATTAAC                                                       
||||||||||||||||||||||||||||||||||||  |||| |||||||                                    ||||||||                                                        
ATGAGGGAGGTAAAGTGTAATTAACTTAAAAACTCC  AAAG GTGGGAA                                    AAGGTAAA                                                       
                                    AC    T       ATTCTTTTCATCTAATTCTGTATTTAACTTGTATCA        ATGGGAATAATTAATAATAGTTTAAATAACTTCAGTAGTGTAACTTTTAAGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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