SE3830235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8553
  • Solanum tuberosum
  • SE3830235
  • hAT
  • Hat5
  • chr07:7782912-7783434
  • AGTGAGTG
  • AGTGAGTGTAGAGGTGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
    G G G   A         AATGA   CAAACATAGGTAATCCGTCCAATCCGTCCAGAATTTTAAGGGTTGAGCTCAAGATAATTTGAATTGGGTTCAATCTCAACTCATTCAAGGCCTAACCCATTTTAAGAGAATCCTCAATTTAGCCCAATTCAATCTCCAATTTCAATCCGTTTTAAAACTCTTTACTAAGATATGTTTAAATGTATAAATTATTATCTATTTAACATCTTTTAGGATTTATCTATCCATTTGT
 AGT A T TAG GGTGTCAAA     ACC                                                                                                                                                                                                                                        
 ||| | | ||| |||||||||     |||                                                                                                                                                                                                                                        T
 TCA T A ATC CCACAGTTT     CCC                                                                                                                                                                                                                                        
G   G G -   C         ACCCG   AACCAACTTTAACCTCTATAATTTTACCCAACTTTATCTTTAGCCCAACCCAGAACTGGGCGGGTTCAAATCAAACCTGAGTTTACCCAAACCAGGTTTACCCGATTTTTGCCCAACCCAGAACTGGGCCGGTTAAACTGGGCTAATTAGAGTTATTAAAATTGTATCACTATAAATTGAAAATATTAGTGTTACACTTAAAGTCGAGTTCTAAAAAAAAAAATTTTTTCCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End