SE3810237

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8555
  • Solanum tuberosum
  • SE3810237
  • Tc1/Mariner
  • St1
  • chr01:92320821-92321098
  • TA
  • CCCTCTGTTTCTAATTATTTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACT  -                     CATATTTCTTTTT    TTGTCCCTAATTACTTGTCCATTTTGACAAATCAAGAAAAGACAAAACAAATTTACCTATTATACCCTCAATTAATTACTTTGAAAAAGGTAAAACTTTTT
    CC CTCTGTTTCTAATTATTTGTC             TTAG                                                                                                     
    || |||||||||||||||||||||             ||||                                                                                                     G
    GG GAGATAAGGATTAATGAACAG             TAAA                                                                                                     
  AT  A                     ------------A    AATTTAAACGTGTAGATAATTCTTTTGTTATTAATTGTATCACTCAAATAGTAAAATAGAGATAATTAATGCTTCACCTACTTAATTTTTGAATGCTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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