Plant MITE

SE3830241

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8559
Solanum tuberosum
SE3830241
hAT
Hat3
chr01:64359848-64360044
TACACAAT
CAGGGGCGGAG

Secondary structure and sequence

TSD TIR

5'

3'

TACACAAT   G       CC   -   TACTAAGGTCCGAACCCCTTCGGCGGAAAATTATATTGATTATACATGGTTAAAATAATTTTTTATGTATA
        CAG GGCGGAG  ACC TTG                                                                       
        ||| |||||||  ||| |||                                                                       T
        GTC CCGCCTC  GTC TAA                                                                       
TAACACAT   A       -A   C   AAGTTATTCCCCCAAGTTTTAGACATCTTTATCTGTGTGCTTCATCGGCTTCCCCCAAGCTGTAGATGATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830241

TACACAATCAGGGGCGGAGCCACCTTGTACTAAGGTCCGAACCCCTTCGGCGGAAAATTATATTGATTATACATGGTTAAAATAATTTTTTATGTATATATAGTAGATGTCGAACCCCCTTCGGCTACTTCGTGTGTCTATTTCTACAGATTTTGAACCCCCTTATTGAAAATCCTGACTCCGCCACTGTACACAAT

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