SE3830248

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8566
  • Solanum tuberosum
  • SE3830248
  • hAT
  • Hat33
  • chr12:802828-803445
  • GACCAAGT
  • TTAGGGGTGGGCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GACCAAG              TCAGTTTAATCAAA    -        TCT    TATTCGGTTTTAGAAAAGTGTGCACCATATTTCAAACCAAACTAGATCGATTCGGTTCGGTTTAGTTCGATGTTTTTAAATCGGTTTTTCGGTGTGAATAAAAATAAAAAGGGAATATGATAAAGTAACAATTGTTGTTCACTTCACACTTCAAACTTCAAAGTAACAACTAACAGTCTAAAATAAAAAGTAATAACATCAAAATAGTTTTGTTTAGGCTGGGTGCCCTTTACTGTTTTGAAGTGTAAATGATAAAGTGTG
       TTAGGGGTGGGCGT              TTTT GGTTCGGT   TCGG                                                                                                                                                                                                                                                                     
       ||||||||||||||              |||| ||||||||   ||||                                                                                                                                                                                                                                                                      
       GATCCCCACCCGTA              TGGC TTTTGGTT   TGGC                                                                                                                                                                                                                                                                     
TGAACCA              ----------TTTA    C        ---    TTGGCTTGATAAAACCAAGAAGCCACAAAGCCAAGCCACAGCCAAGTAAAAAAAACCTTGAAGCCTCAAGCCACATTCCCAGGGCTTTGATGCTACGTGGCTTCTTGGCTTCAAAATAATTTATTTAAATTTAAATTTAATATAATAAATTATTATGACTATATAAAACTGAGTTTTATAAATGGACCGGGTAAAGTTAAAAATTGAAATGGACCGGGTAAAGTTAAAATTTAAAACCTCGGATTTGTTTTGTCATTTCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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