Plant MITE

SE3820250

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8568
Solanum tuberosum
SE3820250
Mutator
M6
chr01:21744737-21745084
TAGTAATTA
TAGTAATTAGGGATAAGGGTCTGAAAAATACCCAACTTTGGTCGAATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACC

Secondary structure and sequence

TSD TIR

5'

3'

    A                        A  -            A                                        C                     A   TTTAAACATATATATTTTCCCACGTGGACATAAAAAATAATGCAAAATTATAAATAGTAATGT
TAGT ATTAGGGATAAGGGTCTGAAAAAT CC CAACTTTGGTCG ATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTA CTCCCTAGACTATTTAATACC TAT                                                               
|||| |||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||                                                                
ATTA TGATCCCTATTCCCAGACTTTTTA GG GTTGAAACCAGC TAAACGATAACGCTATGATTTGAAAGTACTCCTGGATAAT GAGGGATTTGATAAATTATGG CAT                                                               
    A                        C  A            C                                        A                     -   AAAAAAATGGGGGGACTTGATAAATTATCACATAAAATTTCCATATATTCACGGGTGCACCTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820250

TAGTAATTAGGGATAAGGGTCTGAAAAATACCCAACTTTGGTCGAATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCATATTTTAAACATATATATTTTCCCACGTGGACATAAAAAATAATGCAAAATTATAAATAGTAATGTGTCCACGTGGGCACTTATATACCTTTAAAATACACTATTAAATAGTTCAGGGGGGTAAAAAAATACGGTATTAAATAGTTTAGGGAGATAATAGGTCCTCATGAAAGTTTAGTATCGCAATAGCAAATCCGACCAAAGTTGAGGCATTTTTCAGACCCTTATCCCTAGTAATTA

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