Plant MITE

SE3820251

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8569
Solanum tuberosum
SE3820251
Mutator
M11
chr06:34929322-34929645
TTTAATTTA
AGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TTTAATTT     TAAG         -     TTA         C           A                                       C           T          A        -GT    C      CAC    --TGA   -   A AATT
        AGGGA    GTACAAGTA CCCCT   GACTATGAC GAAATCCCAGA ACACACCTTAACTAAATTAAGGTCCTATTACCCCCTGAA TTATTTTTTTT GTAATTTTGT CACCTTTT   CTTA GTGGCA   TCCG     CTC CAC C    
        |||||    ||||||||| |||||   ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||   |||| ||||||   ||||     ||| ||| |    G
        TCCCT    CATGTTCAT GGGGA   CTGATACTG CTTTAGGGTCT TGTGTGGAATTGATTTGATTCCAGGATAATGGGGGACTT GGTAAAAAAAA CATTAAAACA GTGGAAAA   GAAT CACCGT   AGGT     GAG GTG G    
ATTTAATT     TTTA         A     --C         A           C                                       A           -          C        AAC    A      ---    TTATA   A   C CGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820251

TTTAATTTAGGGATAAGGTACAAGTACCCCTTTAGACTATGACCGAAATCCCAGAAACACACCTTAACTAAATTAAGGTCCTATTACCCCCTGAACTTATTTTTTTTTGTAATTTTGTACACCTTTTGTCTTACGTGGCACACTCCGTGACTCCACACAATTGAGGCGCGTGAGAGATATTTGGATGCCACATAAGCAAAAAAGGTGCACAAAATTACAAAAAAAATGGATTCAGGGGGTAATAGGACCTTAGTTTAGTTAAGGTGTGTCTCTGGGATTTCAGTCATAGTCCAGGGGATACTTGTACATTTTCCCTTTAATTTA

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