SE3820258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8576
  • Solanum tuberosum
  • SE3820258
  • Mutator
  • M42
  • chr01:3036970-3037290
  • GAAATAATA
  • GGCATAATACATAAGCAGACACTCAAACTTGGCCTCAGCTGGCAAGTAACCACTCCAACTTTGAGTATGCACACAAGACACCTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAATAATA                -  A    C               T         C  CTC          TA  C   - A          ACTCGTCTCC    T T                   ACAAAATGATCATCTAG    CTCCAAAATTTATGTGCCACA
         GGCATAATACATAAGC AG CACT AAACTTGGCCTCAGC GGCAAGTAA CA   CAACTTTGAG  TG ACA C AGACACCTCA          GCTG G CAGTTGAACACTCCAACTT                 ACAC                     
         |||||||||||||||| || |||| ||||||||||||||| ||||||||| ||   ||||||||||  || ||| | ||||||||||          |||| | |||||||||||||||||||                 ||||                     T
         CCGTATTATGTATTTG TC GTGA TTTGAACCGGAGTTG CCGTTCATT GT   GTTGAAACTC  AC TGT G TCTGTGGAGT          TGAC C GTTGATTTGTGAGGTTGAG                 GGTG                     
ATAATAAAG                G  -    A               T         C  TAA          TC  A   A A          ----------    - -                   -------------CAGG    ATATAAAACACCTGTGGGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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