SE3830263

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8581
  • Solanum tuberosum
  • SE3830263
  • hAT
  • Hat36
  • chr01:66516543-66517285
  • CCAGCAAG
  • GCAAGTAGAGCTGTCAAAATGGGCTTGACCCGTTAAGTCGGCCCA

Secondary structure and sequence

TSD    TIR
5'



3'
CCA  AA                 ----           TTA G        AC    --    TGAATTAAGTAGGGTTGGACCTAATTTTTTTTGGCCCAGCCTCATTTGGCCCGCTAGCCTCGTAGGCCCAACTTGTGAGGCTTAGAGACCAGCCTATGGGCTATGAATGTTAAAAATATTTATTATAAATTTTTTAGTAGTGTTTTATTTTTAAAGATTTTGTCAATAAATATCTAAAAAATATAAAATGAAGTCTAACTCCTTTGTAGATCTTTTACATTTTAGGGCCATTAGCCCACTAAAATCAAGCCTATTTTTGTTTTTATGCCTAATTTTTCATTTCCCCTTTGTTGTCTTGTTTAGAAAAAAATGA
   GC  GTAGAGCTGTCAAAATG    GGCTTGACCCG   A TCGGCCCA  CCAA  CCCT                                                                                                                                                                                                                                                                                                                         
   ||  |||||||||||||||||    |||||||||||   | ||||||||  ||||  ||||                                                                                                                                                                                                                                                                                                                          
   CG  CATCTCGACAGTTTTAC    CCGGATTGGGT   T AGTTGGGT  TGGA  TGCC                                                                                                                                                                                                                                                                                                                         
GAA  AC                 TTAA           --- G        --    AT    CGATATCTCAATTTACCTAATCCTGTTCGACCGAGAAAATTAATTTCCCGAATATTTTATCTTGAGTTGGGTCGGGATTCGCCCGGTGCCCAACCCTGCCCAGCTGGGAAGTGGGTTTTTCACTTGTTGTAACCAAAGAATCTTCCTAAATATTCTCATAGATTTTCATAGCTTGCAACTACAGACTACTTGTGCTGTAGTTATGTATGTTTTTAAGTCCATACTTAATGTATGAAATTACTTATGAATGTTTGGTTGTATTATCGGTTCTATGTTGCAGCATTCTAAGTAGGCTCGTTTTTTATAATGTACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End