Plant MITE

SE3830265

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8583
Solanum tuberosum
SE3830265
hAT
Hat3
chr01:34258035-34258238
CTCTTAGG
TCTTAGGCAGGGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

C   TA -    G  C       --CCTTG  C           ----      CCCCC TCGGCGGAAAATTATATTATTTATACATGGTTGAAATATTTTTTTGTG
 TCT  G GCAG GG GGAGCCA       TA TAAGGGGGTTC    GTCGAA     T                                                
 |||  | |||| || |||||||       || |||||||||||    ||||||     |                                                T
 AGA  C CGTC CT CCTCGGT       GT ATTCCCCCAAG    AGACAT     C                                                
    TC T    G  A       TCTAAAA  T           TTTT      ----- TTTATCTGTGTGTTTCATCGGCTTCCCCCAAGCTGTAGATGATATATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830265

CTCTTAGGCAGGGGCGGAGCCACCTTGTACTAAGGGGGTTCGTCGAACCCCCTTCGGCGGAAAATTATATTATTTATACATGGTTGAAATATTTTTTTGTGTATATATAGTAGATGTCGAACCCCCTTCGGCTACTTTGTGTGTCTATTTCTACAGATTTTGAACCCCCTTATTGAAAATCTTGGCTCCATCGCTGCTCCTAGA

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