SE3830267

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8585
  • Solanum tuberosum
  • SE3830267
  • hAT
  • Hat5
  • chr04:28026785-28027308
  • CTAAGAAT
  • GAATTAGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                 CTAA     A    CGTCA      A   CAACTATAGGTAACCGGCCCAACCCGCCCATAATTTTAAGGGTTGGGCTCAAGAAAATTTGAATTGGGTTCAATCTCAATTCATCAAGTCTTCACTCATTTTAAGAGAATCCTCAATTGAGCCCAATTTAATCTCCAATTTCAACCCGTTTTAAGACCTTTTATTTTCATTGATGTAATGTATGTTACTATATTGAAGGTATGAATTACTATCTACT
                                     GAATT GGGG     AAAATG ACC                                                                                                                                                                                                                         
                                     ||||| ||||     |||||| |||                                                                                                                                                                                                                          
                                     TTTAA CCTC     TTTTAC CAA                                                                                                                                                                                                                         
TAAGAATCATCTACACAGTTTACCCACCCAACTTAAC     -    TATAA      C   CTTTATCTTTAACCTAACCCAAGACTGGGCGGGTTCAAATGAAACCCGAGTTTACCCGAATTTTCGCCCAACCCAGAACTGGGCGGGTTAAACTGGGCGAATTAGAGATATTAAAATTATAAACAATAAATTCAAAATATTGGTGTTAAACTTAAAGTTGAGTTCTTTTAAAATTTTTTCTTAAATGTTTACCTATCTATTTAGGATTTTCTATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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