Plant MITE

SE3820280

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8598
Solanum tuberosum
SE3820280
Mutator
M11
chr12:39036765-39037112
ACAAAATCA
GGGAAAAGGTACAAGTACCCCCTAGACTATTACCAAAATCCAGAGACATACTTTAACTAAACTAAGGTCCTATTACCCC

Secondary structure and sequence

TSD TIR

5'

3'

ACAAAATCAA    A      CAA        -        T   A     -      C                             -   TCACCCCCCACCCCCACCCCCA      C      TTTT                    T      C       -CCAAATAT    C     CTT
          GGGA AAGGTA   GTACCCCC TAGACTAT ACC AAATC CAGAGA ATACTTTAACTAAACTAAGGTCCTATTAC CCC                      CTGAAC CATTTT    TGTAATTTTGTACACCTTTT GGCTTA GTGGCAT         CTCC ACGCG   
          |||| ||||||   |||||||| |||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||| |||                      |||||| ||||||    |||||||||||||||||||| |||||| |||||||         |||| |||||   G
          CCCT TTCTGT   CATGGGGG ATCTGATA TGG TTTAG GTCTCT TGTGGAATTGATTTGATTCCAGGATAATG GGG                      GACTTG GTAAAA    ATATTAAAACATGTGGAAAA CCGAAT TACCGTG         GAGG TGCGT   
AACTAAAACA    A      ATA        G        C   C     A      A                             C   ----------------------      A      -CAT                    -      A       TGAAGCACT    -     CAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820280

ACAAAATCAAGGGAAAAGGTACAAGTACCCCCTAGACTATTACCAAAATCCAGAGACATACTTTAACTAAACTAAGGTCCTATTACCCCTCACCCCCCACCCCCACCCCCACTGAACCCATTTTTTTTTGTAATTTTGTACACCTTTTTGGCTTACGTGGCATCCAAATATCTCCCACGCGCTTGAACTGCGTGGAGTCACGAAGTGTGCCATATAAGCCAAAAGGTGTACAAAATTATATACAAAATGAGTTCAGGGGCGTAATAGGACCTTAGTTTAGTTAAGGTGTATCTCTGAGATTTCGGTCATAGTCTAGGGGGGTACATATGTCTTATCCCACAAAATCAA

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