Plant MITE

SE3810282

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8600
Solanum tuberosum
SE3810282
Tc1/Mariner
St6
chr07:20760736-20760998
TA
TACTCCCTCTGTCCCAATTTATGTGGCACTTTTCG

Secondary structure and sequence

TSD TIR

5'

3'

                A                  TTATTC    G        T  -AAG        A      GCG      A    -CAATTT       -ATGA    -TATAT        ACTACGT
TACTCCCTCTGTCCCA TTTATGTGGCACTTTTCG      GAGA TCAAACAA TC    TTTGACCG GAATTT   CATGGA TCTT       TTTTGAA     AATT      ATTTGTAA       
|||||||||||||||| ||||||||||||||||||      |||| |||||||| ||    |||||||| ||||||   |||||| ||||       |||||||     ||||      ||||||||       A
ATGAGGGAGGCAGGGT AAATACACCGTGAAAAGT      CTCT AGTTTGTT AG    AAACTGGC TTTAAA   GTATCT AGAA       AAAACTT     TTAA      TGAATATT       
                A                  CTAAAC    A        C  ATAG        A      -AA      -    AATTCAT       AATAG    TAACAC        ATTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810282

TACTCCCTCTGTCCCAATTTATGTGGCACTTTTCGTTATTCGAGAGTCAAACAATTCAAGTTTGACCGAGAATTTGCGCATGGAATCTTCAATTTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAAATTATTATAAGTCACAATAATTGATAATTCAAAATACTTAAAAGATCTATGAAAAATTTACGGTCAAAGATAGACTTGTTTGAATCTCCAAATCTGAAAAGTGCCACATAAAATGGGACGGAGGGAGTA

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