SE3820291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8609
  • Solanum tuberosum
  • SE3820291
  • Mutator
  • M3
  • chr07:43996353-43996720
  • TAAATAAAA
  • AGGGAAAAAGGATAAATATACTCTCGAACTATCATAAATGGTATGCAGATATCCTCTGTCATACTTTTGGGACAATGGTGTCCCTGTCGTTCAAAAACTAGAGCATATATGCCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATAAA         G          C   C        A                             C          A                      -C      ----            CACT        AGACTATATAGGG       G  C                 A       A
        AGGGAAAAA GATAAATATA TCT GAACTATC TAAATGGTATGCAGATATCCTCTGTCATA TTTTGGGACA TGGTGTCCCTGTCGTTCAAAAA  TAGAGC    ATATATGCCCTT    CTAACGGA             ACACGTG CG AATCTTATCCGTCGATC GATATTT 
        ||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||    ||||||||||||    ||||||||             ||||||| || ||||||||||||||||| ||||||| A
        TCCCTTTTT CTGTTTATAT AGG CTTGATAG ATTTACCATACGTCTATGGGAGGCAGTAT AAAACCCTGT ACCACGGGGACAGCAGGTTTTT  ATCTCG    TATATATGGGAA    GATTGCCT             TGTGCAC GT TTAGAATAGGTGGTTAG CTGTAAA 
AAAATAAA         A          A   A        C                             A          A                      TA      ATCG            ATAT        ----------GTA       A  A                 G       T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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