Plant MITE

SE3810293

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8611
Solanum tuberosum
SE3810293
Tc1/Mariner
St6
chr04:12276841-12277103
TA
TACTCCCTCTGTCCCAATTTATGTGACACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

                A        A       CATT        G   A   -      G      C GG     GCG    AAA    -CAATTT       --ATGAAATTTATAT       AAC   GTA
TACTCCCTCTGTCCCA TTTATGTG CACTTTT    TTTCGAGA TCA ACA GTTTAA TTTGAC G  AATTT   CATG   TCTT       TTTTGAA               ATTTGTA   TAC   
|||||||||||||||| |||||||| |||||||    |||||||| ||| ||| |||||| |||||| |  |||||   ||||   ||||       |||||||               |||||||   |||   A
ATGAGGGAGGCAGGGT AAATACAC GTGAAAA    AAAGCTCT AGT TGT CAGATT AAACTG C  TTAAA   GTAT   AGAA       AAAACTT               TGAATAT   ATG   
                A        C       ATCT        A   A   T      G      T AT     -AA    -CA    AATTTAT       AATAGATAACAACAC       --C   AAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810293

TACTCCCTCTGTCCCAATTTATGTGACACTTTTCATTTTTCGAGAGTCAAACAGTTTAAGTTTGACCGGGAATTTGCGCATGAAATCTTCAATTTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAAAGTACTATAAGTCACAACAATAGATAATTCAAAATATTTAAAAGAACTATGAAAAATTTACTGTCAAAGTTAGACTTGTATGAATCTCGAAATCTAAAAAGTGCCACATAAAATGGGACGGAGGGAGTA

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