SE3810299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8617
  • Solanum tuberosum
  • SE3810299
  • Tc1/Mariner
  • St15
  • chr11:10717654-10717920
  • TA
  • TACTCTCTCTGTCCAACAATAGTTGTTCACTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
        C                        TGACTTGGCAC    CTTAAGAAACAATAAATAATAGGGGTAATATTACTATATTATTCTTTGACTTTATTAAATTAAATGCTTTGAGAAATGTGTTAGATGATAA
TACTCTCT TGTCCAACAATAGTTGTTCACTAT           ACCC                                                                                           
|||||||| ||||||||||||||||||||||||           ||||                                                                                            
ATGAGGGA GCAGGTTGTTATCAACAGGTGATA           TGAT                                                                                           
        A                        -----------    TTTTATCAACAGGTTGTTATGAACAGGTTAAATCTTTTAGTTCTCTATTAAATAGAAAACACTGATAAAATGGTAACGATAATTTATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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