SE3820302

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8620
  • Solanum tuberosum
  • SE3820302
  • Mutator
  • M29
  • chr04:57313158-57313493
  • TTTAATAAA
  • TTAATAAAGGGAAAATGCATAAGTACCCCCAACCTATTTCCGAAATTTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCGAACTTATTTTATAAATAATTTTCTACCCCTTTTCAGTCTACGTGGCACT

Secondary structure and sequence

TSD    TIR
5'



3'
T   A                      C    A     T                                                  --------                                   A         G    --TGAACCA  TAACTTGAAAAAATT
 TTA TAAAGGGAAAATGCATAAGTAC CCCA CCTAT TCCGAAATTTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCC        GAACTTATTTTATAAATAATTTTCTACCCCTTTTC GTCTACGTG CACT         GA               
 ||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||| ||||         ||                
 AAT ATTTCCCTTTTACGTATTCATG GGGT GGATA GGGCTTTAGAGTTTCTGTGTGAATATGATATGATTCCAGGATGATGGGGG        TTTGAATAAAATATTTATTAAAAGATGGGGAAAAG CGGATGCAC GTGA         CG               
A   A                      T    A     C                                                  AGGGGGGG                                   C         A    TAGAAAACC  GATCGCGCACAACTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End