SE3820303

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8621
  • Solanum tuberosum
  • SE3820303
  • Mutator
  • M29
  • chr10:15147634-15147974
  • AATAATATT
  • AATAATATTGGGAAAATGCATAAGTACTCCCAACCTATGCTCAAAATTTCAGAGACACACTTATAATTTATTAAGTTTCCATTACC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A       A               --              A                      ATT       TT   -      CCCCCTCCC          TTA                          A                ------AA    ATA  ---    AAAA
AATA TATTGGG AAATGCATAAGTACT  CCCAACCTATGCTC AAATTTCAGAGACACACTTATA   TATTAAG  TCC ATTACC         CCCGAACTTA   TATAAATAATTTTCTACCCATTTTCG CCTACGTGGCACTATC        CCAG   GC   TTGA    
|||| ||||||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||||   |||||||  ||| ||||||         ||||||||||   |||||||||||||||||||||||||| ||||||||||||||||        ||||   ||   ||||     
TTAT ATAACCT TTTACGTGTTCATGA  GGGTTGGATACGGG TTTAGAGTTTCTGTGTGAATAT   ATGATTC  AGG TAATGG         GGGCTTGAAT   ATATTTATTAAAAGATGGGTAAAAGC GGATGCACCGTGATAG        GGTC   CG   AACT    
    A       C               AG              C                      GAT       -C   A      --------A          TAA                          C                AAGACTCG    --A  CAC    ATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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