SE3820307

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8625
  • Solanum tuberosum
  • SE3820307
  • Mutator
  • M6
  • chr01:88067567-88067807
  • TTTTTAAAA
  • TTTTAAAAGGGATAAGGGTCTGAAAAATACCCCAACTTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T                                              C                                                  AA   C  ATTT    CATA
 TTT AAAAGGGATAAGGGTCTGAAAAATACCCCAACTTTGGTCGGATTTG TGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTT  TAC GT    TAAA    
 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||    ||||     
 AAA TTTTCCCTATTCCCAGACTTTTTATGGGGTTGAAACCAGCCTAAAC ACAACGCTATGATTTGAAAGTATTCCTGGATAATGGAGGGATCTGATAAA  GTG CA    GTTT    
A   T                                              A                                                  -G   -  -CCT    ATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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