Plant MITE

SE3830309

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8627
Solanum tuberosum
SE3830309
hAT
Hat38
chr12:24968849-24969609
ATATATAC
TATATACCAGTGGCGGAGCTAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

A      C   T          G   TTTCTCCA      TTCATACTT   G C   -- AAAAAAATAAACCTTGCTAGTCAGATTATAAAGATTGGCTTCAAAATAGTCATACTTCAGTATCAAATTAACCTAATATCCAAAATGAAAATTCTTAAAACAGAAACTTACAAAATATCAATGGATAAACTAAGGAAGATGAAGTAGGACAAATATATTGACGGATAGTTTCATACACACCAAAATATGTAAATTGTAAAGTGGTAACAACAATTGCACTCGACGACACTTCATCTCTTGAAATGTTTTCATAATACACTCATTAGAAACATCTTTAAATATTTTTTTTATGCCTACATAAGGCACTATGCAACCATTTAAATAGAC
 TATATA CAG GGCGGAGCTA GAT        AGGGTG         TAG A AGG  T                                                                                                                                                                                                                                                                                                                                       
 |||||| ||| |||||||||| |||        ||||||         ||| | |||  |                                                                                                                                                                                                                                                                                                                                        
 ATATAT GTC CCGCCTCGAT CTG        TCCCAC         CAG T CTA  T                                                                                                                                                                                                                                                                                                                                       
C      A   C          G   --TACCGC      ---------   - -   CT GTTGGAAGCAGCCTTTTAAAAATGCCCATATATATGATTTATAGCTCAAAAAACCTATATATGATTGTCAACTTGTTGGAACTGTGTTATTTCCAACTGTCGGGTCGCCAATTCCAACACGTTTCTACGGAGTCGCAAGGCCCAAGCTCGGGTTCACAACTGCAAAAGAAATTTAAAAAAGTAATAAGGCAAACAAGAGAATCTTTTCCGTTTTGAGTCGGACCCAAGCTAGGGTCCGAACTTGTAAAGTAAATAAATTATAAACAAGGCAAAAAGAGAATTCTTTTTCATGTTTTCAATGGAAAAAATTCAATTTCCTTTGTTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830309

ATATATACCAGTGGCGGAGCTAGGATTTTCTCCAAGGGTGTTCATACTTTAGGACAGGTAAAAAAATAAACCTTGCTAGTCAGATTATAAAGATTGGCTTCAAAATAGTCATACTTCAGTATCAAATTAACCTAATATCCAAAATGAAAATTCTTAAAACAGAAACTTACAAAATATCAATGGATAAACTAAGGAAGATGAAGTAGGACAAATATATTGACGGATAGTTTCATACACACCAAAATATGTAAATTGTAAAGTGGTAACAACAATTGCACTCGACGACACTTCATCTCTTGAAATGTTTTCATAATACACTCATTAGAAACATCTTTAAATATTTTTTTTATGCCTACATAAGGCACTATGCAACCATTTAAATAGACCTTTTGTTTCCTTTAACTTAAAAAAGGTAACTTTTGTACTTTTTCTTAAGAGAAAAACGGAACAAATATTAAATAAATGAAATGTTCAAGCCTGGGATCGAACCCAGGCTGAGTTTTGCCTTTTCTAAGAGAACAAACGGAATAATGAAAAAATTTAAAGAAAACGTCAACACTTGGGCTCGAACCCGGAACGCTGAGGCATCTTTGCACAACCTTAACCGCTGGGCTGTCAACCTTTATTGTGTCAAGGTTGTTCAACTGTTAGTATATATCCAAAAAACTCGATATTTAGTATATATACCCGTAAAAATTTTCCGACGAAGGTTGTTCATCTGACCACCCTCGCCATGTCGTAGCTCCGCCCCTGATATATAC

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