SE3850325

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8643
  • Solanum tuberosum
  • SE3850325
  • PIF/harbinger
  • To4
  • chr11:1134083-1134748
  • TAA
  • GCTAGCGTTTGGCCATAGATTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
  TAA   AG                   AAATATTTTTGG      T        T         -------     AATTTCACCATGTGTTTGGCCATAGTATTTGTGAAATATATTTCACTTTTTAGAAAAATATGATTTATACCCATAAGTTTTAAAAACTATCAAAACTAACCATAAGTTTGTATTACAAGTCAATTGGATCTTCGTTGCAACAAATAACAAGTAGTTTCCATGCCACTAGAGCAATGTGGTAGTTTGGAGTGAGTGCAACAAGCATCATTTCATACATCGTGAAGTAGACAAAGCACATGACTTTGTTACCTTGAGCCGATTGTTCA
     GCT  CGTTTGGCCATAGATTTCC            CAAATA TATTTGGG GAAAATTTG       GGTGA                                                                                                                                                                                                                                                                          
     |||  |||||||||||||||||||            |||||| |||||||| |||||||||       |||||                                                                                                                                                                                                                                                                          T
     CGG  GCAAACCGGTATCTAAAGG            GTTTAT ATAAACCC TTTTTAAAC       CACAA                                                                                                                                                                                                                                                                          
AATCC   --                   ------------      T        C         CGTTTAT     ACAGGTATGTTAAACGGTAATAAACCGTTTATAAAAACCGTTTATAGGGTTTAAGGGTTTATGATCAAAAAAGATCATAAACCCGGTTTAGAGTAATAAACCCTAGAAAACTTTTAACTTTAAAATGTGGTTTGAAAATAGAAAATGTTTTTGTGGGAGATATCATCAACAAACGTAACATAATGTATTAAAAAATGCACTTGTGGTTTCATCACTACTTTATAAGTCACTTATACTTTCACTACTATACCAACAACTACTTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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