SE3830328

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8646
  • Solanum tuberosum
  • SE3830328
  • hAT
  • Hat28
  • chr03:6899618-6899820
  • CTTGGGTG
  • GCAGTGGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGGGT             -CACATG   -              -----------    ---- ACCCCTTCGTCGGAAAGTTACATTGTGAGGGTAGAATAAAAATAT
       GCAGTGGCGGAGC       TTG TTGAGGGGTGTCGA           CCGA    C                                             
       |||||||||||||       ||| ||||||||||||||           ||||    |                                              
       CGTCACCGCCTTG       AAC GATTCCCCACAGTT           CACT    C                                             
GTGGGTT             ATCTTAA   C              TTATATTTCTT    TTAA GTATCTTCGGTTCCTCACAGTTATACATTATATATATGTATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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