SE3810340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8658
  • Solanum tuberosum
  • SE3810340
  • Tc1/Mariner
  • St13
  • chr03:8335008-8335260
  • TA
  • TACTCCCTCCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
      C       AAAT    A      CCTT      -----  AGTCTGTTTAAAAAAGAATGCCCTCTTTTCTTTTTTGATAACATTTTAATTTCAGCTTTCCACGTGGCATGTTTAAAGTCACAA
TACTCC TCCGTTT    AAGA TGACCT    TTCTTT     TT                                                                                    
|||||| |||||||    |||| ||||||    ||||||     ||                                                                                     
ATGAGG AGGCAAA    TTCT ACTGGA    AAACTG     TG                                                                                    
      T       GTTT    C      --CC      AACCG  CCTCAAAATCTTTTATTTCTTCTGAAAACTTAGAACACCAGGATTTAATTTCAATACAGTTTACGTGATTTAACGGGAAGATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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