SE3810342

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8660
  • Solanum tuberosum
  • SE3810342
  • Tc1/Mariner
  • St5
  • chr06:17019735-17019986
  • TA
  • TACTCCCTCCATTTTAATTTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A             -----A        TGACTT  CGTAGAATTTAAGAAAGTAAAGAAGACTTTTGAATCTTGTGCTCTTAAACTAAAGATATGTAGAATGTACCAAAATATCCTTTAA
TACTCCCTCC TTTTAATTTGTTT      TTTAGTTT      GG                                                                                     
|||||||||| |||||||||||||      ||||||||      ||                                                                                     T
ATGAGGGAGG AAAGTTAAACAAA      GAAAGGAA      AA                                                                                     
          C             CCGAAG        ------  ATCAGATAAAGTTTTTCTTTCAGAGAAAGGAGAAAACCGTTGAGAAATTAAAGTTGAAAGGTGTACTGTATAAATTCTGGTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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