Plant MITE

SE3810345

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8663
Solanum tuberosum
SE3810345
Tc1/Mariner
St5
chr11:9976171-9976420
TA
TACTCCCTCTGTTTCAATTTGCTTGTTCTACTTTCCTT

Secondary structure and sequence

TSD TIR

5'

3'

                     C        C   -C   TTTAGTCC  TTC        -----    TCTTTCCTTTTTGGCAACTCTTTAATTTCAACTTTCCAATGACATGTTTAAGACCACAA
TACTCCCTCTGTTTCAATTTG TTGTTCTA TTT  CTT        GT   AAAAAGTA     TGCC                                                           
||||||||||||||||||||| |||||||| |||  |||        ||   ||||||||     ||||                                                            
ATGAGGGAGGCAAAGTTAAAC AATAGGAT AAA  GAA        CA   TTTTTCAT     TTGA                                                           
                     A        A   CT   CCGTACCT  TAT        TTCTT    AAACTTAGAACACCAGAATTTAATTTCTATATAGTTTACATAGTTTTACAGGAAATTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810345

TACTCCCTCTGTTTCAATTTGCTTGTTCTACTTTCCTTTTTAGTCCGTTTCAAAAAGTATGCCTCTTTCCTTTTTGGCAACTCTTTAATTTCAACTTTCCAATGACATGTTTAAGACCACAAGATTAAAGGACATTTTGATACATTTGATATATCTTTAATTTAAGACCACAAGATTCAAAAGTTTTCTTTACTTTTTTATACTCCATGCCAAGTCAAAATAGGATAAACAAATTGAAACGGAGGGAGTA

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