SE3820347

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8665
  • Solanum tuberosum
  • SE3820347
  • Mutator
  • M6
  • chr08:25282544-25282880
  • AAATTTCTA
  • GGGATAAGGGTCTGAAAAATATTCCAACTTTGGTCAAATTTGTTGTTGCGATACTAAACTTTCATAAGGACCTATTACCTCCCTAGACTATTTAATACC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATTTCTA                                   AA                            A                                 ATATTTTTTATCCCATGA     TTAATAGTGTATTTTAAAGGTATATATATGCCCACGTGGACACATT
         GGGATAAGGGTCTGAAAAATATTCCAACTTTGGTC  ATTTGTTGTTGCGATACTAAACTTTCAT AGGACCTATTACCTCCCTAGACTATTTAATACC                  ACTAT                                              
         |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                  |||||                                              A
         CCCTATTCCCAGACTTTTTATGGGGTTGAAACCAG  TAAACAACAACGTTATGATTTGAAAGTA TCCTGGATAATGGAGGGATCTGATAAATTATGG                  CATAA                                              
ATCTTTAAA                                   CC                            C                                 ------------------     AATTTATATATATAAACAGGTGCACCTGTATTTTTTATTATTTATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3