SE3810348

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8666
  • Solanum tuberosum
  • SE3810348
  • Tc1/Mariner
  • St14
  • chr03:19057861-19058210
  • TA
  • TACTCCCTCCGGTCCTTTTTATATGTCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
           ----  -   T             ------  T    TAAATAGTTGGTCCATAATAGAGTACTTGTCATTTCATAAAATCAATGCATAAATTACAATATTCTTCCTATTTTACCTTGTGAGTTATTAGCCTTGAAAATATGCATTTGACCAACATAAAAAACTAAGTGA
TACTCCCTCCG    GT CCT TTTATATGTCATC      CT ACTA                                                                                                                                     
|||||||||||    || ||| |||||||||||||      || ||||                                                                                                                                      
ATGAGGGAGGC    CA GGA AAATATACAGTGG      AT AAAG                                                                                                                                     
           AAGA  A   T             TAAAAA  -    TGCACGTAATTCTTTAATTTATTCAAATGATAAGATGGGAATAAATTAAATAAAAAAAATTCAGTTGAAAAGTTAGTTACTTATACTAAATTAAATAAAACTAATTAATGAAACTGGTTACTTGTATTTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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