Plant MITE

SE3820349

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8667
Solanum tuberosum
SE3820349
Mutator
M11
chr07:45716608-45716942
TCAAAATTA
AGGGAAAATGCATAAGTACCCCCCAACATATGCCCGAAATCCCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCGAACTTATTTTATAAATAATTTTCTACCCCTTTTCGGCCTACGTGGCACTATCAACCAGATAGCTTGA

Secondary structure and sequence

TSD TIR

5'

3'

TCAAAATT                       -   CA             C                                       -C                           C       C      C          ------CAA    ATA  ---    AAAA
        AGGGAAAATGCATAAGTACCCCC CAA  TATGCCCGAAATC CAGAGACACACTTATACTATACTAAGGTCCTATTACCCC  CGAACTTATTTTATAAATAATTTTCTA CCCTTTT GGCCTA GTGGCACTAT         CCAG   GC   TTGA    
        ||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||         ||||   ||   ||||     
        TCTCTTTTACGTATTCATGGGGG GTT  ATACGGGCTTTAG GTTTCTGTGTGAATATGATATGATTCCAGGATAATGGGG  GCTTGAATAAAATATTTATTAAAAGAT GGGAAAA CCGGAT CACCGTGATA         GGTC   CG   AACT    
ATTAAAAC                       C   AG             A                                       TA                           A       A      A          AAACACCCA    --G  CAC    ATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820349

TCAAAATTAGGGAAAATGCATAAGTACCCCCCAACATATGCCCGAAATCCCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCGAACTTATTTTATAAATAATTTTCTACCCCTTTTCGGCCTACGTGGCACTATCAACCAGATAGCTTGAAAAAATTATCAACACGCGCTGGACCCACAAAATAGTGCCACATAGGCCAAAAAGGGATAGAAAATTATTTATAAAATAAGTTCGATGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTTTGAGATTTCGGGCATAGATTGCGGGGGTACTTATGCATTTTCTCTCAAAATTA

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