Plant MITE

SE3820352

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8670
Solanum tuberosum
SE3820352
Mutator
M21
chr12:58534654-58535273
TTAAGAAAA
AACGGAAAAGGGTCAAAAATACCCCTGAACTATTGGAAATGGATCACATATACCCTCCGTTTGATTTTGGGGTCAAAAATACCCTTACCGTTAGTGTATTGGCTCACTTTTACCCCTCAAAACTAACAGATGCCATGTCACTTAAAAAATCACATAAAACCATATTTTTTTTGGTGACTTGGAAATTCAAATGGACAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TTAAGAA                                                                                                                                                                           T G                          AAAATCCTTCCATTGCCGTT        -C  -  A   --- G  AAGTGATTAAAGTTTGTATTTTTTTTAATAAAGAATTGTGAAATAAAGATTTCATATCAAAATGTTGTGT
       AACGGAAAAGGGTCAAAAATACCCCTGAACTATTGGAAATGGATCACATATACCCTCCGTTTGATTTTGGGGTCAAAAATACCCTTACCGTTAGTGTATTGGCTCACTTTTACCCCTCAAAACTAACAGATGCCATGTCACTTAAAAAATCACATAAAACCATATTTTTTT G TGACTTGGAAATTCAAATGGACAAAA                    CTCCTAAC  GA AG AAC   T AA                                                                      
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||                    ||||||||  || || |||   | ||                                                                       
       TTGCCTTTTCCCAGTTTTTATGGGGACTTGATAACCTTTACCTAGTGTATATGGGAGGCAAACTAAAACCCCAGTTTTTATGGGAATGGCAATCACATAACCGAGTGAAAATGGGGAGTTTTGATTGTCTACGGTACAGTGAATTTTTTAGTGTATTTTGGTATAAAAAAA C ACTGAACCTTTAAGTTTACCTGTTTT                    GAGGGTTG  CT TC TTG   G GT                                                                      
AAAAGAA                                                                                                                                                                           T G                          --------------------        TA  G  G   TTA -  GTTCACCCCACCCACATTATGTGGGAACCGAGTTATTTTCAAGTTTTTACTGTTTTAATGTCGCTTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820352

TTAAGAAAACGGAAAAGGGTCAAAAATACCCCTGAACTATTGGAAATGGATCACATATACCCTCCGTTTGATTTTGGGGTCAAAAATACCCTTACCGTTAGTGTATTGGCTCACTTTTACCCCTCAAAACTAACAGATGCCATGTCACTTAAAAAATCACATAAAACCATATTTTTTTTGGTGACTTGGAAATTCAAATGGACAAAAAAAATCCTTCCATTGCCGTTCTCCTAACCGAAGAAACTGAAAAGTGATTAAAGTTTGTATTTTTTTTAATAAAGAATTGTGAAATAAAGATTTCATATCAAAATGTTGTGTTAATTTCGCTGTAATTTTGTCATTTTTGAACTTTTATTGAGCCAAGGGTGTATTACACCCACCCCACTTGTGGATTGTTGCTGTCATGTTGGGAGTTTTGTCCATTTGAATTTCCAAGTCAGCTAAAAAAATATGGTTTTATGTGATTTTTTAAGTGACATGGCATCTGTTAGTTTTGAGGGGTAAAAGTGAGCCAATACACTAACGGTAAGGGTATTTTTGACCCCAAAATCAAACGGAGGGTATATGTGATCCATTTCCAATAGTTCAGGGGTATTTTTGACCCTTTTCCGTTAAGAAAA

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