SE3830358

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8676
  • Solanum tuberosum
  • SE3830358
  • hAT
  • Hat43
  • chr01:37664928-37665280
  • ATTGGATC
  • GATCCAGGGACGGCTCGACAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTG       -----  A        -  G  AAGACA  T    T    ---CC      TTAA     GGCA    ----     --   AATAA  ---      TTTTATTTTTGTAACAAATATTGAATACTATTGATAGAAAAAGTAAACTTTTCATGAAAAATGAAGAAATTATTAGAAGAAATTT
    GATCCAG     GG CGGCTCGA CA AT      TG GCCT AGGC     TCAAAT    GGGGC    TTTT    TTAAT  AAT     GT   TATAAG                                                                                     
    |||||||     || |||||||| || ||      || |||| ||||     ||||||    |||||    ||||    |||||  |||     ||   ||||||                                                                                     G
    CTAGGTT     CC GCCGAGTT GT TA      AC CGGA TTCG     AGTTTG    CCCCG    ATTT    TTAAA  TTA     TT   AATATA                                                                                     
  TA       AGTCA  -        C  G  ---ATA  -    T    TTTTT      ----     --GA    GAAT     AA   -----  GAA      TTAACTAAAGAAGATAAAAAGTTAACTACTATATTGTGAAGAATAAAATTTAATAAAAAGTACTCTATATCATGAGGTTTATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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