SE3810360

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8678
  • Solanum tuberosum
  • SE3810360
  • Tc1/Mariner
  • St18
  • chr06:1241186-1241460
  • TA
  • TACTCCCTCCATTTCAAATTAATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                         AATTAT     TATTTTTCATTTTTTTCAGATTAACTTAATCGTTCAATCTTCAAGACTACTTTTAAAATATTCTTCCAATTTTACCCTTCATTAGTTAGTATTGAAATTAGTTA
TACTCCCTCCATTTCAAATTAATTG      TGAGA                                                                                                        
|||||||||||||||||||||||||      |||||                                                                                                         
ATGAGGGAGGTAAAGTTTAATTAAC      TAACA                                                                                                        
                         -----G     AGGTCACAAAGTGTTAAAAATTCTTTTTTTCTAATTCTGAATGTATTGAAAAGTAAAAATGGGCATAATTAATAACAGTTTAAATATTGATTTGTAATAATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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