Plant MITE

SE3830364

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8682
Solanum tuberosum
SE3830364
hAT
Hat44
chr11:28249083-28249373
ATTTCATG
CATGCAATGGTGTAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

ATTT    ----  A     T     ----CCC   GGACACTTTTCATCCGAAAATTATATCGTATATACAAGTAAAATAATAAATAAAGTAGCCTTATAACATATTTGGACACCCTTGACAAAAATAATATGATATAGTCTAGTGGTCT
    CATG    CA TGGTG AGCCA       TTT                                                                                                                   
    ||||    || ||||| |||||       |||                                                                                                                   C
    GTAC    GT ACCAC TCGGT       GTG                                                                                                                   
        TTTA  C     C     CTTTAAA   CTTTCCACAGGTTTTTACTCGAACGAGAAGAATTTTTCACCTTTTTTTAAACCATGATCACTCTAAGCTTGTGTGCTTGTGTAATTAAAACACAGAAATGAGAAAGTTCCGCGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830364

ATTTCATGCAATGGTGTAGCCACCCTTTGGACACTTTTCATCCGAAAATTATATCGTATATACAAGTAAAATAATAAATAAAGTAGCCTTATAACATATTTGGACACCCTTGACAAAAATAATATGATATAGTCTAGTGGTCTCATGCGCCTTGAAAGAGTAAAGACACAAAATTAATGTGTTCGTGTGTTCGAATCTCACTAGTACCAAATTTTTTTCCACTTTTTAAGAAGAGCAAGCTCATTTTTGGACACCTTTCGTGAAATTTCTGGCTCCACCACTGATTTCATG

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