SE3820367

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8685
  • Solanum tuberosum
  • SE3820367
  • Mutator
  • M42
  • chr04:8282720-8283046
  • TAAATAATA
  • TAGGCATAATACATAAGCATTTCTCATCACTTGACAAGTAAGGACTTCAACTTTGAGAGTGTACATTTAGACACCTCAACTTGGTCTGAACTAACAACTAAACACTCCAACT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATAA               ---  -    ---------     TC   T A   G    G              A   T         C         TG    GA   --AA  AC              CATCCC  CT   -  -  G         GATG    C  GACA
       TAGGCATAATACATA   AG CATT         TCTCA  ACT G CAA TAAG ACTTCAACTTTGAG GTG ACATTTAGA ACCTCAACT  GTCT  ACT    CA  TAAACACTCCAACT      CA  ATG TC TC TGGACACCT    CTGA AT    
       |||||||||||||||   || ||||         |||||  ||| | ||| |||| |||||||||||||| ||| ||||||||| |||||||||  ||||  |||    ||  ||||||||||||||      ||  ||| || || |||||||||    |||| ||    C
       ATCCGTATTATGTAT   TC GTGA         GGAGT  TGA C GTT ATTT TGAGGTTGAAACTC TAC TGTAGATCT TGGAGTTGA  TAGA  TGA    GT  ATTTGTGAGGTTGA      GT  TAC AG AG ATCTGTGGA    GATT TA    
ATAATAG               CTA  T    AATAGAACC     --   C -   G    G              A   C         T         -G    GG   CACA  AA              ----AA  TT   T  T  -         ----    T  AACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End