SE3850368

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8686
  • Solanum tuberosum
  • SE3850368
  • PIF/harbinger
  • To6
  • chr04:22890014-22890456
  • TTA
  • AGGGGTCATTTGGTTTGAAGACAAGTTATCTTGGGAT

Secondary structure and sequence

TSD    TIR
5'



3'
TT       A      T   -------        T          ----------------TAAATA  A    ATAAGTTATGTTGGGATAAGTTATGTTGGGATAAGTTATGATAGTATTAGTTATGTTAAGATTATTTCTTATTGGTTGTTTGGTTTGTCAAATATGCATGACATAATTTCTAAGAGTAAGTTGTGTGTTAACAAAAATACCCTCTAAGAATAAATTGT
  AGGGGTC TTTGGT TGA       AGACAAGT ATCTTGGGAT                      TG TGGG                                                                                                                                                              
  ||||||| |||||| |||       |||||||| ||||||||||                      || ||||                                                                                                                                                              T
  TCCCCAG AAACCA ACT       TCTGTTTA TAGGATCCTA                      GA AACA                                                                                                                                                              
AT       C      C   GCCTATT        T          TTAAAAAATCATGGGTAGTTAA  -    AACCAATGTTTCACACCCTATTGAATAAGGTCCTAATAATTAATACTGACTCTATTGAATAGGGATGAACACCCACCACATGATTAGGGCCTTATACAATAGGGCCCTATTTTTACATTTTATTGTTTTAATGGGGGAATTTGGGTGACAATATTTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End