Plant MITE

SE3830370

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8688
Solanum tuberosum
SE3830370
hAT
Hat3
chr01:1980226-1980429
GTTACGTT
ACGTTCAGTGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

GTT    --               --CCTTA            -  --    A CCCCCTTCGGCGGAAAATTATATGATTTATACATGGTTAAAATAATTTTTTAG
   ACGT  TCAGTGGCGGAGCCA       CAATGAGGGGGT CA  TCCG C                                                     
   ||||  |||||||||||||||       |||||||||||| ||  |||| |                                                      
   TGCA  GGTCACCGCCTCGGT       GTTATTCCCCCA GT  TAGA T                                                     
  T    TT               CCTAAAA            A  TT    - TTTTATATCTGTGTGCTTCATCGGCTTCCCCCCAGCTGTAGATGATATATATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830370

GTTACGTTCAGTGGCGGAGCCACCTTACAATGAGGGGGTCATCCGACCCCCCTTCGGCGGAAAATTATATGATTTATACATGGTTAAAATAATTTTTTAGGTATATATAGTAGATGTCGACCCCCCTTCGGCTACTTCGTGTGTCTATATTTTTAGATTTTGAACCCCCTTATTGAAAATCCTGGCTCCGCCACTGGTTACGTT

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