Plant MITE

SE3820376

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8694
Solanum tuberosum
SE3820376
Mutator
M29
chr06:4805108-4805423
TTTTTATTG
GAAAATGCATAAGTACCTCCAACCTATGCATGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCTCT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTATTGA                    -         A      C                              C        C   CACCCCCCCCCCCAA                 A         C         CT     GCACTATCTTTTGGGCCCA
          GAAAATGCATAAGTACCTCC AACCTATGC TGAAAT TCAGAGACACACTTATACTATACTAAGGTC TATTACCC TCT               AACTTATTTTATAAATA TTTTCTACC TTTTTCGGC  ACGTG                   
          |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||               ||||||||||||||||| ||||||||| |||||||||  |||||                   A
          TTTTTACGTATTCATGGGGG TTGGATACG GCTTTA GGTCTCTGTGTGAATATGATATGATTCTAG ATAATGGG AGG               TTGAATAAAATATTTAT AAAAGATGG AAAAAGCCG  CAATT                   
   TTTTTCC                    G         G      A                              T        -   --------------C                 -         -         --     TTTTTTAACAGTTGTGCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820376

TTTTTATTGAGAAAATGCATAAGTACCTCCAACCTATGCATGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCTCTCACCCCCCCCCCCAAAACTTATTTTATAAATAATTTTCTACCCTTTTTCGGCCTACGTGGCACTATCTTTTGGGCCCAACGCGTGTTGACAATTTTTTTTAACGCCGAAAAAGGTAGAAAATATTTATAAAATAAGTTCGGAGGGTAATATGATCTTAGTATAGTATAAGTGTGTCTCTGGAATTTCGGGCATAGGTTGGGGGGTACTTATGCATTTTTCCTTTTT

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