SE3820380

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8698
  • Solanum tuberosum
  • SE3820380
  • Mutator
  • M6
  • chr07:21243625-21243967
  • TTATATAAA
  • TTATATAAAGGGATAAGGGTCTAAAAAATACCCAACTTTGGCCGAAATTGCTGTTACGATACCAAACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         A           CTA          -                 C                  AAAT                 --A     TTTAATACCGTATTTTAAACATATATATTTGCCCACGTGGACATAAAAAATAATGCAAAATTATAAATAGTAAT
 TTATATAA GGGATAAGGGT   AAAAATACCC AACTTTGGCCGAAATTG TGTTACGATACCAAACTT    GAGGACCTATTACCCCC   GACTA                                                                          
 |||||||| |||||||||||   |||||||||| ||||||||||||||||| ||||||||||||||||||    |||||||||||||||||   |||||                                                                           
 AATATATT CCCTATTCCCA   TTTTTATGGG TTGAAACCGGCTTTAAC ACAATGCTATGGTTTGAA    CTCCTGGATAATGGGGG   TGATA                                                                          
A        -           AAC          G                 A                  ATAC                 ACT     AATTATCACATAAGAAATAGGGGACTTGATAAATTATCACATAAAATTTCCATATATACACGGGTGCACCTGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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