SE3810381

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8699
  • Solanum tuberosum
  • SE3810381
  • Tc1/Mariner
  • St17
  • chr08:972216-972495
  • N.A.
  • ACTCCCTCTGGTCCATGTAAATGAATTGTTGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
T          G       -AAA             -TAT  CACACCCCTAAAGAAAAATATTTAAGGACAAAAATTAAAGGCTACTTTCCACTATTACCCTTCCTGATAATTCCCAAACTATTCTCCTAGAAAATGTAT
 ACTCCCTCTG TCCATGT    TGAATTGTTGGGG    GG                                                                                                   
 |||||||||| |||||||    |||||||||||||    ||                                                                                                    
 TGAGGGAGAT AGGTATA    ACTTGATAACCCT    AA                                                                                                   
C          A       GTTC             GAAA  AGCATCAAGTTTTACTCACTTAACGAGTTTCAATTTCTTTTAACAACCCTAAAAAAAAGAAAGTATAAATGGGGAGTAAATTACTCCAAGAATTGATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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